Bpp Phyl3 Bppbppotransitionmodelformat Class Reference
bpp-phyl3: bpp::BppOTransitionModelFormat Class Reference
bpp-phyl3: bpp::MixedTransitionModelInterface Class Reference
bpp-phyl3: bpp::WrappedSubstitutionModel Class Reference
bpp-phyl: bpp::OSubstitutionModel Class Reference
bpp-phyl3: bpp::CodonReversibleSubstitutionModelInterface Class Reference
bpp-phyl3: bpp::WrappedTransitionModel Class Reference
bpp-phyl3: bpp::GTR Class Reference
bpp-phyl: bpp::TreeTemplate Class Template Reference
bpp-phyl3: bpp::DRTreeLikelihood Class Reference
bpp-phyl: bpp::GCFrequenciesSet Class Reference
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bpp-phyl3: bpp::DRTreeLikelihood Class Reference
bpp-phyl3: bpp::MixedTransitionModelInterface Class Reference
bpp-phyl3: bpp::SimProcessEdge Class Reference
bpp-phyl: bpp::MixtureOfASubstitutionModel Class Reference
bpp-phyl3: bpp::AbstractIMultiPhyloTree Class Reference
bpp-phyl3: bpp::MixtureOfTransitionModels Class Reference
bpp-phyl: bpp::FullNucleotideFrequenciesSet Class Reference
bpp-phyl3: bpp::WrappedSubstitutionModel Class Reference
bpp-phyl3: bpp::GTR Class Reference
bpp-phyl: bpp::FrequenciesSet Class Reference
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bpp-phyl: bpp::MarkovModulatedFrequenciesSet Class Reference
bpp-phyl: bpp::WordFromIndependentFrequenciesSet Class Reference
bpp-phyl3: bpp::OneChangeRegisterTransitionModel Class Reference
bpp-phyl3: bpp::LikelihoodCalculationSingleProcess Class Reference
bpp-phyl3: bpp::OneProcessSequencePhyloLikelihood Class Reference
bpp-phyl3: bpp::MarkovModulatedSubstitutionModel Class Reference
bpp-phyl3: bpp::BppOTransitionModelFormat Class Reference
bpp-phyl3: bpp::LGL08_CAT Class Reference
bpp-phyl: bpp::YpR_Gen Class Reference
bpp-phyl: bpp::SubstitutionModel Class Reference
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bpp-phyl3: bpp::MixtureOfTransitionModels Class Reference
bpp-phyl: bpp::SubstitutionCount Class Reference
bpp-phyl: bpp::AbstractMixedSubstitutionModel Class Reference
bpp-phyl3: bpp::MixtureOfASubstitutionModel Class Reference
bpp-phyl3: bpp::DRNonHomogeneousTreeLikelihood Class Reference
bpp-phyl: bpp::CodonRateSubstitutionModel Class Reference