Bpp Phyl3 Bppmixedtransitionmodelinterface Class Reference
bpp-phyl3: bpp::MixedTransitionModelInterface Class Reference
bpp-phyl3: bpp::BppOTransitionModelFormat Class Reference
bpp-phyl3: bpp::CodonReversibleSubstitutionModelInterface Class Reference
bpp-phyl: bpp::DetailedSiteSimulator Class Reference
bpp-phyl3: bpp::AbstractCodonAAFitnessSubstitutionModel Class Reference
bpp-phyl3: bpp::WrappedSubstitutionModel Class Reference
bpp-phyl3: bpp::MixedTransitionModelInterface Class Reference
bpp-phyl3: bpp::GTR Class Reference
bpp-phyl3: bpp::DRTreeLikelihood Class Reference
bpp-phyl3: bpp::LGL08_CAT Class Reference
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bpp-phyl3: bpp::DRTreeLikelihood Class Reference
bpp-phyl3: bpp::MixtureOfTransitionModels Class Reference
bpp-phyl3: bpp::AbstractIMultiPhyloTree Class Reference
bpp-phyl: bpp::MixtureOfASubstitutionModel Class Reference
bpp-phyl3: bpp::WrappedTransitionModel Class Reference
bpp-phyl3: bpp::SimProcessEdge Class Reference
bpp-phyl3: bpp::GTR Class Reference
bpp-phyl3: bpp::OneChangeRegisterTransitionModel Class Reference
bpp-phyl3: bpp::LGL08_CAT Class Reference
bpp-phyl3: bpp::MixtureOfASubstitutionModel Class Reference
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bpp-phyl3: bpp::LikelihoodCalculationSingleProcess Class Reference
bpp-phyl3: bpp::WrappedSubstitutionModel Class Reference
bpp-phyl3: bpp::OneProcessSequencePhyloLikelihood Class Reference
bpp-phyl3: bpp::DRHomogeneousTreeLikelihood Class Reference
bpp-phyl: bpp::CanonicalStateMap Class Reference
bpp-phyl3: bpp::D1WalkSubstitutionModel Class Reference
bpp-phyl3: bpp::DRHomogeneousTreeLikelihood Class Reference
bpp-phyl3: bpp::MixtureOfTransitionModels Class Reference
bpp-phyl3: bpp::BppOTransitionModelFormat Class Reference
bpp-phyl: bpp::TwoTreeLikelihood Class Reference
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bpp-phyl: bpp::AbstractMixedSubstitutionModel Class Reference
bpp-phyl3: bpp::MixtureOfASubstitutionModel Class Reference
bpp-phyl3: bpp::DRNonHomogeneousTreeLikelihood Class Reference
bpp-phyl3: bpp::DRNonHomogeneousTreeLikelihood Class Reference
bpp-phyl3: bpp::AbstractCodonAAFitnessSubstitutionModel Class Reference
bpp-phyl3: bpp::MarkovModulatedSubstitutionModel Class Reference